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Species belonging to selected taxon:

Centaurea maculosa



ABOUT THIS RECORD

ID: MNEST046665
species: Centaurea maculosa
miRNA family: MIR160
source: microPC, original name: miR160

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTATGAGGAGCCAAGCA

mismatches: 4
bulges: 0

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pre-miRNA
TGCCTGGCTCCCTGTATGCCATTTTCAGAGCCCATCGGTATTTCCAATGGCCTCCGTGGATGGCGTATGAGGAGCCAAGCA

dot-bracket secondary structure
.((.(((((((..((((((((((..(.(((.((((.((.....)).)))).))).)..))))))))))..))))))).)).


SIMILARITIES
miRBase ptc-MIR160c: 1e-21

PMRD ptc-miR160c: 1e-21

microPC miR160: 9e-41
UniProt no hits

RFAM mir-160: 5e-18

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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